Convert a TensorFlow Instance Segmentation Model to OpenVINO™

This Jupyter notebook can be launched after a local installation only.

TensorFlow, or TF for short, is an open-source framework for machine learning.

The TensorFlow Object Detection API is an open-source computer vision framework built on top of TensorFlow. It is used for building object detection and instance segmentation models that can localize multiple objects in the same image. TensorFlow Object Detection API supports various architectures and models, which can be found and downloaded from the TensorFlow Hub.

This tutorial shows how to convert a TensorFlow Mask R-CNN with Inception ResNet V2 instance segmentation model to OpenVINO Intermediate Representation (OpenVINO IR) format, using Model Conversion API. After creating the OpenVINO IR, load the model in OpenVINO Runtime and do inference with a sample image.

Table of contents:

• Prerequisites

• Imports

• Settings

• Download Model from TensorFlow Hub

• Convert Model to OpenVINO IR

• Test Inference on the Converted Model

• Select inference device

  • Load the Model

  • Get Model Information

  • Get an Image for Test Inference

  • Perform Inference

  • Inference Result Visualization

• Next Steps

  • Async inference pipeline

  • Integration preprocessing to model

Prerequisites

Install required packages:

%pip install -q "openvino>=2023.1.0" "numpy>=1.21.0" "opencv-python" "matplotlib>=3.4"

Note: you may need to restart the kernel to use updated packages.

The notebook uses utility functions. The cell below will download the notebook_utils Python module from GitHub.

# Fetch the notebook utils script from the openvino_notebooks repo
import urllib.request

urllib.request.urlretrieve(
    url="https://raw.githubusercontent.com/openvinotoolkit/openvino_notebooks/main/notebooks/utils/notebook_utils.py",
    filename="notebook_utils.py",
);

Imports

# Standard python modules
from pathlib import Path

# External modules and dependencies
import cv2
import matplotlib.pyplot as plt
import numpy as np

# Notebook utils module
from notebook_utils import download_file

# OpenVINO modules
import openvino as ov

Settings

Define model related variables and create corresponding directories:

# Create directories for models files
model_dir = Path("model")
model_dir.mkdir(exist_ok=True)

# Create directory for TensorFlow model
tf_model_dir = model_dir / "tf"
tf_model_dir.mkdir(exist_ok=True)

# Create directory for OpenVINO IR model
ir_model_dir = model_dir / "ir"
ir_model_dir.mkdir(exist_ok=True)

model_name = "mask_rcnn_inception_resnet_v2_1024x1024"

openvino_ir_path = ir_model_dir / f"{model_name}.xml"

tf_model_url = "https://www.kaggle.com/models/tensorflow/mask-rcnn-inception-resnet-v2/frameworks/tensorFlow2/variations/1024x1024/versions/1?tf-hub-format=compressed"

tf_model_archive_filename = f"{model_name}.tar.gz"

Download Model from TensorFlow Hub

Download archive with TensorFlow Instance Segmentation model (mask_rcnn_inception_resnet_v2_1024x1024) from TensorFlow Hub:

download_file(
    url=tf_model_url,
    filename=tf_model_archive_filename,
    directory=tf_model_dir
);

model/tf/mask_rcnn_inception_resnet_v2_1024x1024.tar.gz:   0%|          | 0.00/232M [00:00<?, ?B/s]

Extract TensorFlow Instance Segmentation model from the downloaded archive:

import tarfile

with tarfile.open(tf_model_dir / tf_model_archive_filename) as file:
    file.extractall(path=tf_model_dir)

Convert Model to OpenVINO IR

OpenVINO Model Optimizer Python API can be used to convert the TensorFlow model to OpenVINO IR.

mo.convert_model function accept path to TensorFlow model and returns OpenVINO Model class instance which represents this model. Also we need to provide model input shape (input_shape) that is described at model overview page on TensorFlow Hub. Optionally, we can apply compression to FP16 model weights using compress_to_fp16=True option and integrate preprocessing using this approach.

The converted model is ready to load on a device using compile_model or saved on disk using the serialize function to reduce loading time when the model is run in the future.

ov_model = ov.convert_model(tf_model_dir)

# Save converted OpenVINO IR model to the corresponding directory
ov.save_model(ov_model, openvino_ir_path)

Test Inference on the Converted Model

Select inference device

select device from dropdown list for running inference using OpenVINO

import ipywidgets as widgets

core = ov.Core()
device = widgets.Dropdown(
    options=core.available_devices + ["AUTO"],
    value='AUTO',
    description='Device:',
    disabled=False,
)

device

Dropdown(description='Device:', index=1, options=('CPU', 'AUTO'), value='AUTO')

Load the Model

openvino_ir_model = core.read_model(openvino_ir_path)
compiled_model = core.compile_model(model=openvino_ir_model, device_name=device.value)

Get Model Information

Mask R-CNN with Inception ResNet V2 instance segmentation model has one input - a three-channel image of variable size. The input tensor shape is [1, height, width, 3] with values in [0, 255].

Model output dictionary contains a lot of tensors, we will use only 5 of them: - num_detections: A tf.int tensor with only one value, the number of detections [N]. - detection_boxes: A tf.float32 tensor of shape [N, 4] containing bounding box coordinates in the following order: [ymin, xmin, ymax, xmax]. - detection_classes: A tf.int tensor of shape [N] containing detection class index from the label file. - detection_scores: A tf.float32 tensor of shape [N] containing detection scores. - detection_masks: A [batch, max_detections, mask_height, mask_width] tensor. Note that a pixel-wise sigmoid score converter is applied to the detection masks.

For more information about model inputs, outputs and their formats, see the model overview page on TensorFlow Hub.

It is important to mention, that values of detection_boxes, detection_classes, detection_scores, detection_masks correspond to each other and are ordered by the highest detection score: the first detection mask corresponds to the first detection class and to the first (and highest) detection score.

model_inputs = compiled_model.inputs
model_outputs = compiled_model.outputs

print("Model inputs count:", len(model_inputs))
print("Model inputs:")
for _input in model_inputs:
    print("  ", _input)

print("Model outputs count:", len(model_outputs))
print("Model outputs:")
for output in model_outputs:
    print("  ", output)

Model inputs count: 1
Model inputs:
   <ConstOutput: names[input_tensor] shape[1,?,?,3] type: u8>
Model outputs count: 23
Model outputs:
   <ConstOutput: names[] shape[49152,4] type: f32>
   <ConstOutput: names[box_classifier_features] shape[300,9,9,1536] type: f32>
   <ConstOutput: names[] shape[4] type: f32>
   <ConstOutput: names[mask_predictions] shape[100,90,33,33] type: f32>
   <ConstOutput: names[num_detections] shape[1] type: f32>
   <ConstOutput: names[num_proposals] shape[1] type: f32>
   <ConstOutput: names[proposal_boxes] shape[1,?,..8] type: f32>
   <ConstOutput: names[proposal_boxes_normalized, final_anchors] shape[1,?,..8] type: f32>
   <ConstOutput: names[raw_detection_boxes] shape[1,300,4] type: f32>
   <ConstOutput: names[raw_detection_scores] shape[1,300,91] type: f32>
   <ConstOutput: names[refined_box_encodings] shape[300,90,4] type: f32>
   <ConstOutput: names[rpn_box_encodings] shape[1,49152,4] type: f32>
   <ConstOutput: names[class_predictions_with_background] shape[300,91] type: f32>
   <ConstOutput: names[rpn_box_predictor_features] shape[1,64,64,512] type: f32>
   <ConstOutput: names[rpn_features_to_crop] shape[1,64,64,1088] type: f32>
   <ConstOutput: names[rpn_objectness_predictions_with_background] shape[1,49152,2] type: f32>
   <ConstOutput: names[detection_anchor_indices] shape[1,?] type: f32>
   <ConstOutput: names[detection_boxes] shape[1,?,..8] type: f32>
   <ConstOutput: names[detection_classes] shape[1,?] type: f32>
   <ConstOutput: names[detection_masks] shape[1,100,33,33] type: f32>
   <ConstOutput: names[detection_multiclass_scores] shape[1,?,..182] type: f32>
   <ConstOutput: names[detection_scores] shape[1,?] type: f32>
   <ConstOutput: names[proposal_boxes_normalized, final_anchors] shape[1,?,..8] type: f32>

Get an Image for Test Inference

Load and save an image:

image_path = Path("./data/coco_bike.jpg")

download_file(
    url="https://storage.openvinotoolkit.org/repositories/openvino_notebooks/data/data/image/coco_bike.jpg",
    filename=image_path.name,
    directory=image_path.parent,
);

data/coco_bike.jpg:   0%|          | 0.00/182k [00:00<?, ?B/s]

Read the image, resize and convert it to the input shape of the network:

# Read the image
image = cv2.imread(filename=str(image_path))

# The network expects images in RGB format
image = cv2.cvtColor(image, code=cv2.COLOR_BGR2RGB)

# Resize the image to the network input shape
resized_image = cv2.resize(src=image, dsize=(255, 255))

# Add batch dimension to image
network_input_image = np.expand_dims(resized_image, 0)

# Show the image
plt.imshow(image)

<matplotlib.image.AxesImage at 0x7f39e4396eb0>

Perform Inference

inference_result = compiled_model(network_input_image)

After model inference on the test image, instance segmentation data can be extracted from the result. For further model result visualization detection_boxes, detection_masks, detection_classes and detection_scores outputs will be used.

detection_boxes = compiled_model.output("detection_boxes")
image_detection_boxes = inference_result[detection_boxes]
print("image_detection_boxes:", image_detection_boxes.shape)

detection_masks = compiled_model.output("detection_masks")
image_detection_masks = inference_result[detection_masks]
print("image_detection_masks:", image_detection_masks.shape)

detection_classes = compiled_model.output("detection_classes")
image_detection_classes = inference_result[detection_classes]
print("image_detection_classes:", image_detection_classes.shape)

detection_scores = compiled_model.output("detection_scores")
image_detection_scores = inference_result[detection_scores]
print("image_detection_scores:", image_detection_scores.shape)

num_detections = compiled_model.output("num_detections")
image_num_detections = inference_result[num_detections]
print("image_detections_num:", image_num_detections)

# Alternatively, inference result data can be extracted by model output name with `.get()` method
assert (inference_result[detection_boxes] == inference_result.get("detection_boxes")).all(), "extracted inference result data should be equal"

image_detection_boxes: (1, 100, 4)
image_detection_masks: (1, 100, 33, 33)
image_detection_classes: (1, 100)
image_detection_scores: (1, 100)
image_detections_num: [100.]

Inference Result Visualization

Define utility functions to visualize the inference results

import random
from typing import Optional


def add_detection_box(
    box: np.ndarray, image: np.ndarray, mask: np.ndarray, label: Optional[str] = None
) -> np.ndarray:
    """
    Helper function for adding single bounding box to the image

    Parameters
    ----------
    box : np.ndarray
        Bounding box coordinates in format [ymin, xmin, ymax, xmax]
    image : np.ndarray
        The image to which detection box is added
    mask: np.ndarray
        Segmentation mask in format (H, W)
    label : str, optional
        Detection box label string, if not provided will not be added to result image (default is None)

    Returns
    -------
    np.ndarray
        NumPy array including image, detection box, and segmentation mask

    """
    ymin, xmin, ymax, xmax = box
    point1, point2 = (int(xmin), int(ymin)), (int(xmax), int(ymax))
    box_color = [random.randint(0, 255) for _ in range(3)]
    line_thickness = round(0.002 * (image.shape[0] + image.shape[1]) / 2) + 1

    result = cv2.rectangle(
        img=image,
        pt1=point1,
        pt2=point2,
        color=box_color,
        thickness=line_thickness,
        lineType=cv2.LINE_AA,
    )

    if label:
        font_thickness = max(line_thickness - 1, 1)
        font_face = 0
        font_scale = line_thickness / 3
        font_color = (255, 255, 255)
        text_size = cv2.getTextSize(
            text=label, fontFace=font_face, fontScale=font_scale, thickness=font_thickness
        )[0]
        # Calculate rectangle coordinates
        rectangle_point1 = point1
        rectangle_point2 = (point1[0] + text_size[0], point1[1] - text_size[1] - 3)
        # Add filled rectangle
        result = cv2.rectangle(
            img=result,
            pt1=rectangle_point1,
            pt2=rectangle_point2,
            color=box_color,
            thickness=-1,
            lineType=cv2.LINE_AA,
        )
        # Calculate text position
        text_position = point1[0], point1[1] - 3
        # Add text with label to filled rectangle
        result = cv2.putText(
            img=result,
            text=label,
            org=text_position,
            fontFace=font_face,
            fontScale=font_scale,
            color=font_color,
            thickness=font_thickness,
            lineType=cv2.LINE_AA,
        )
    mask_img = mask[:, :, np.newaxis] * box_color
    result = cv2.addWeighted(result, 1, mask_img.astype(np.uint8), 0.6, 0)
    return result

def get_mask_frame(box, frame, mask):
    """
    Transform a binary mask to fit within a specified bounding box in a frame using perspective transformation.

    Args:
        box (tuple): A bounding box represented as a tuple (y_min, x_min, y_max, x_max).
        frame (numpy.ndarray): The larger frame or image where the mask will be placed.
        mask (numpy.ndarray): A binary mask image to be transformed.

    Returns:
        numpy.ndarray: A transformed mask image that fits within the specified bounding box in the frame.
    """
    x_min = frame.shape[1] * box[1]
    y_min = frame.shape[0] * box[0]
    x_max = frame.shape[1] * box[3]
    y_max = frame.shape[0] * box[2]
    rect_src = np.array(
        [[0, 0], [mask.shape[1], 0], [mask.shape[1], mask.shape[0]], [0, mask.shape[0]]],
        dtype=np.float32,
    )
    rect_dst = np.array(
        [[x_min, y_min], [x_max, y_min], [x_max, y_max], [x_min, y_max]], dtype=np.float32
    )
    M = cv2.getPerspectiveTransform(rect_src[:, :], rect_dst[:, :])
    mask_frame = cv2.warpPerspective(
        mask, M, (frame.shape[1], frame.shape[0]), flags=cv2.INTER_CUBIC
    )
    return mask_frame

from typing import Dict

from openvino.runtime.utils.data_helpers import OVDict


def visualize_inference_result(
    inference_result: OVDict,
    image: np.ndarray,
    labels_map: Dict,
    detections_limit: Optional[int] = None,
):
    """
    Helper function for visualizing inference result on the image

    Parameters
    ----------
    inference_result : OVDict
        Result of the compiled model inference on the test image
    image : np.ndarray
        Original image to use for visualization
    labels_map : Dict
        Dictionary with mappings of detection classes numbers and its names
    detections_limit : int, optional
        Number of detections to show on the image, if not provided all detections will be shown (default is None)
    """
    detection_boxes = inference_result.get("detection_boxes")
    detection_classes = inference_result.get("detection_classes")
    detection_scores = inference_result.get("detection_scores")
    num_detections = inference_result.get("num_detections")
    detection_masks = inference_result.get("detection_masks")

    detections_limit = int(
        min(detections_limit, num_detections[0])
        if detections_limit is not None
        else num_detections[0]
    )

    # Normalize detection boxes coordinates to original image size
    original_image_height, original_image_width, _ = image.shape
    normalized_detection_boxes = detection_boxes[0, :detections_limit] * [
        original_image_height,
        original_image_width,
        original_image_height,
        original_image_width,
    ]
    result = np.copy(image)
    for i in range(detections_limit):
        detected_class_name = labels_map[int(detection_classes[0, i])]
        score = detection_scores[0, i]
        mask = detection_masks[0, i]
        mask_reframed = get_mask_frame(detection_boxes[0, i], image, mask)
        mask_reframed = (mask_reframed > 0.5).astype(np.uint8)
        label = f"{detected_class_name} {score:.2f}"
        result = add_detection_box(
            box=normalized_detection_boxes[i], image=result, mask=mask_reframed, label=label
        )

    plt.imshow(result)

TensorFlow Instance Segmentation model (mask_rcnn_inception_resnet_v2_1024x1024) used in this notebook was trained on COCO 2017 dataset with 91 classes. For better visualization experience we can use COCO dataset labels with human readable class names instead of class numbers or indexes.

We can download COCO dataset classes labels from Open Model Zoo:

coco_labels_file_path = Path("./data/coco_91cl.txt")

download_file(
    url="https://raw.githubusercontent.com/openvinotoolkit/open_model_zoo/master/data/dataset_classes/coco_91cl.txt",
    filename=coco_labels_file_path.name,
    directory=coco_labels_file_path.parent,
);

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Then we need to create dictionary coco_labels_map with mappings between detection classes numbers and its names from the downloaded file:

with open(coco_labels_file_path, "r") as file:
    coco_labels = file.read().strip().split("\n")
    coco_labels_map = dict(enumerate(coco_labels, 1))

print(coco_labels_map)

{1: 'person', 2: 'bicycle', 3: 'car', 4: 'motorcycle', 5: 'airplan', 6: 'bus', 7: 'train', 8: 'truck', 9: 'boat', 10: 'traffic light', 11: 'fire hydrant', 12: 'street sign', 13: 'stop sign', 14: 'parking meter', 15: 'bench', 16: 'bird', 17: 'cat', 18: 'dog', 19: 'horse', 20: 'sheep', 21: 'cow', 22: 'elephant', 23: 'bear', 24: 'zebra', 25: 'giraffe', 26: 'hat', 27: 'backpack', 28: 'umbrella', 29: 'shoe', 30: 'eye glasses', 31: 'handbag', 32: 'tie', 33: 'suitcase', 34: 'frisbee', 35: 'skis', 36: 'snowboard', 37: 'sports ball', 38: 'kite', 39: 'baseball bat', 40: 'baseball glove', 41: 'skateboard', 42: 'surfboard', 43: 'tennis racket', 44: 'bottle', 45: 'plate', 46: 'wine glass', 47: 'cup', 48: 'fork', 49: 'knife', 50: 'spoon', 51: 'bowl', 52: 'banana', 53: 'apple', 54: 'sandwich', 55: 'orange', 56: 'broccoli', 57: 'carrot', 58: 'hot dog', 59: 'pizza', 60: 'donut', 61: 'cake', 62: 'chair', 63: 'couch', 64: 'potted plant', 65: 'bed', 66: 'mirror', 67: 'dining table', 68: 'window', 69: 'desk', 70: 'toilet', 71: 'door', 72: 'tv', 73: 'laptop', 74: 'mouse', 75: 'remote', 76: 'keyboard', 77: 'cell phone', 78: 'microwave', 79: 'oven', 80: 'toaster', 81: 'sink', 82: 'refrigerator', 83: 'blender', 84: 'book', 85: 'clock', 86: 'vase', 87: 'scissors', 88: 'teddy bear', 89: 'hair drier', 90: 'toothbrush', 91: 'hair brush'}

Finally, we are ready to visualize model inference results on the original test image:

visualize_inference_result(
    inference_result=inference_result,
    image=image,
    labels_map=coco_labels_map,
    detections_limit=5,
)

Next Steps

This section contains suggestions on how to additionally improve the performance of your application using OpenVINO.

Async inference pipeline

The key advantage of the Async API is that when a device is busy with inference, the application can perform other tasks in parallel (for example, populating inputs or scheduling other requests) rather than wait for the current inference to complete first. To understand how to perform async inference using openvino, refer to the Async API tutorial.

Integration preprocessing to model

Preprocessing API enables making preprocessing a part of the model reducing application code and dependency on additional image processing libraries. The main advantage of Preprocessing API is that preprocessing steps will be integrated into the execution graph and will be performed on a selected device (CPU/GPU etc.) rather than always being executed on CPU as part of an application. This will improve selected device utilization.

For more information, refer to the Optimize Preprocessing tutorial and to the overview of Preprocessing API.